GAGE10

Chr X

G antigen 10

Also known as: GAGE-10

GAGE10 encodes a member of the GAGE (G antigen) family of proteins that are normally expressed in testis and placenta but can be aberrantly activated in various cancers. This gene has low evolutionary constraint with tolerance to loss-of-function variants. Currently, no definitive Mendelian disease associations have been established for GAGE10 mutations in pediatric neurological disorders.

DNmechanismLOEUF 1.83
Clinical SummaryGAGE10
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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ClinVar Variants
30 unique Pathogenic / Likely Pathogenic of 30 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.83LOEUF
pLI 0.002
Z-score 0.02
OE 0.99 (0.471.83)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.93Z-score
OE missense 1.42 (1.141.77)
55 obs / 38.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.99 (0.471.83)
00.351.4
Missense OE1.42 (1.141.77)
00.61.4
Synonymous OE1.36
01.21.6
LoF obs/exp: 4 / 4.0Missense obs/exp: 55 / 38.8Syn Z: -0.99
DN
0.6841th %ile
GOF
0.6346th %ile
LOF
0.1697th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

30 submitted variants in ClinVar

Classification Summary

Pathogenic30
30
Pathogenic

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
30
Likely Pathogenic
0
VUS
0
Likely Benign
0
Benign
0
Total30

Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

GAGE10 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found