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FRAXA

Chr X

fragile site, folic acid type, rare, fra(X)(q27.3) A

Also known as: FMR1

This biological region is found near the 5' regulatory region of the Fragile X messenger ribonucleoprotein 1 (FMR1) gene on the q arm of chromosome X, and contains a CGG trinucleotide repeat with AGG repeat interruptions. This region is highly polymorphic, and alleles with varying numbers of repeats have been observed. Alleles with repeat sizes of 5-44 tend to show mitotic and meiotic stability, while those with about 45-54 repeats are at a higher risk for instability, but show no phenotype. Individuals with alleles that are expanded to 55-200 repeats are at risk for a number of disorders, including fragile X-associated tremor/ataxia syndrome (FXTAS), fragile X-associated premature ovarian insufficiency (FXPOI), and adult-onset neurodegenerative disorder. These alleles tend to be unstable upon transmission, with a bias for expansion during maternal transmission. Alleles containing more than 200 CGG repeats are considered full mutation alleles, and are associated with fragile X syndrome. These alleles display hypermethylation of the FMR1 promoter region. It has been shown that the presence of AGG interruptions reduce the risk of repeat instability. [provided by RefSeq, Apr 2022]

GeneReviewsResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
Curated mechanisms (Gene2Phenotype) include both loss of function and gain of function. Which applies is variant-dependent — do not assume a null variant is, or isn’t, the pathogenic class without checking the specific variant.Curated gene-level mechanism — a prior for triage, not a per-variant call.
8
Active trials
0
Pubs (1 yr)
P/LP submissions
P/LP missense
LOEUF
Multiple*
Mechanism· G2P
📖
GeneReview available — FRAXA
Authoritative clinical overview · Recommended first read
Open GeneReview ↗
Some data sources returned errors (3)

ensembl: Error: Ensembl fetch failed: 400 for /lookup/symbol/homo_sapiens/FRAXA?content-type=application/json

gnomad: Error: Gene not found

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

Constraint data not available from gnomAD.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FRAXA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

Specific Language and Learning Disorders (SLLD)

Study of the Value of Trio Exome Sequencing in the Etiological Assessment of Specific Non-syndromic Language and Learning Disorders

RECRUITING
NCT05939739Phase NACentre Hospitalier Universitaire DijonStarted 2023-08-07
Blood samplesConsultation for results deliveryStudy Humanities and Social Sciences
FMR1 Gene Premutation

Assessment of Ovarian Reserve in Patients With Fragile X Premutation

RECRUITING
NCT07039734Assistance Publique - Hôpitaux de ParisStarted 2025-07-04
collection of data from medical records
Primary Ovarian Insufficiency

Investigation of Copy Number Variations and Genetic Variants in POI

RECRUITING
NCT05327283Ospedale Policlinico San MartinoStarted 2012-01-31
Fragile X Syndrome (FXS)Autism Spectrum Disorder

Group CBT in Adolescents With Fragile X Syndrome and in Adolescents With Autism Spectrum Disorder

RECRUITING
NCT06677866Phase NABambino Gesù Hospital and Research InstituteStarted 2022-09-01
Cognitive behavioral therapyWaiting List
Fragile X Syndrome

Effect of CANnabidiol on Anxiety and GABAergic Function in Individuals With Fragile-X Syndrome

RECRUITING
NCT06261502Phase PHASE2Université de SherbrookeStarted 2025-09-01
CBD Oral SolutionPlacebo
Invasive PreNatal Diagnosis in a Context of Family History of Single-gene Disorders, IncludingSickle Cell DiseaseCystic Fibrosis

Development of Non-Invasive Prenatal Diagnosis for Single Gene Disorders

RECRUITING
NCT06147414Assistance Publique - Hôpitaux de ParisStarted 2024-10-23
Blood sample
Fragile X Syndrome (FXS)Creatine Transporter Deficiency

Optical Imaging in X-linked Disorders.

RECRUITING
NCT06868979Phase NAHospices Civils de LyonStarted 2026-03-30
Clinical assessmentParental questionnairesCognitive assessment
Fragile X SyndromeAutism Spectrum DisorderAutistic Disorder

Alpha Auditory Entrainment for Cognitive Enhancement and Sensory Hypersensitivity in Youth With Developmental Disorders

RECRUITING
NCT06227780Phase NAChildren's Hospital Medical Center, CincinnatiStarted 2023-05-24
Alpha Auditory EntrainmentSham