FPGT-TNNI3K

Chr 1

FPGT-TNNI3K readthrough

This protein functions as a protein kinase involved in peptidyl-serine autophosphorylation and regulation of heart contraction. Mutations cause autosomal recessive dilated cardiomyopathy with ataxia, a condition affecting both cardiac and neurological systems. The gene shows tolerance to loss-of-function variants (pLI near 0, LOEUF 1.425), consistent with the recessive inheritance pattern.

Summary from RefSeq
Research Assistant →
0
Active trials
1
Pubs (1 yr)
3
P/LP submissions
0%
P/LP missense
1.43
LOEUF
Mechanism
Clinical SummaryFPGT-TNNI3K
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
3 unique Pathogenic / Likely Pathogenic· 353 VUS of 500 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.43LOEUF
pLI 0.000
Z-score -1.15
OE 1.16 (0.951.43)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.73Z-score
OE missense 1.09 (1.021.17)
553 obs / 506.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.16 (0.951.43)
00.351.4
Missense OE1.09 (1.021.17)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 67 / 57.6Missense obs/exp: 553 / 506.5Syn Z: -0.13

ClinVar Variant Classifications

500 submitted variants in ClinVar

Classification Summary

Pathogenic3
VUS353
Likely Benign137
Benign4
3
Pathogenic
353
VUS
137
Likely Benign
4
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
3
0
3
Likely Pathogenic
0
0
0
0
0
VUS
28
282
36
7
353
Likely Benign
0
7
80
50
137
Benign
0
0
4
0
4
Total2828912357497

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

FPGT-TNNI3K · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found