FKRP

Chr 19AR

fukutin related protein

Also known as: FKTR, LGMD2I, LGMDR9, MDC1C, MDDGA5, MDDGB5, MDDGC5

This gene encodes a protein which is targeted to the medial Golgi apparatus and is necessary for posttranslational modification of dystroglycan. Mutations in this gene have been associated with congenital muscular dystrophy, cognitive disability, and cerebellar cysts. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, Oct 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 5MIM #613153
AR
Muscular dystrophy-dystroglycanopathy (congenital with or without impaired intellectual development), type B, 5MIM #606612
AR
Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 5MIM #607155
AR

Clinical highlights

Gene-disease validity (ClinGen)
myopathy caused by variation in FKRP · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
3
Active trials
16
Pubs (1 yr)
P/LP submissions
P/LP missense
1.32
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.32LOEUF
pLI 0.000
Z-score 0.78
OE 0.76 (0.461.32)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
1.85Z-score
OE missense 0.71 (0.640.79)
230 obs / 323.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.76 (0.461.32)
00.351.4
Missense OE?0.71 (0.640.79)
00.61.4
Synonymous OE?0.79
01.21.6
LoF obs/exp: 9 / 11.9Missense obs/exp: 230 / 323.6Syn Z: 2.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FKRP · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

VCEP specificationsLimb Girdle Muscular DystrophyReleased
Panel ↗