FBXW11

Chr 5AD

F-box and WD repeat domain containing 11

Also known as: BTRC2, BTRCP2, FBW1B, FBXW1B, Fbw11, Hos, NEDJED

This gene encodes a substrate recognition component of the SCF ubiquitin ligase complex that targets phosphorylated proteins for degradation, regulating critical pathways including Wnt signaling, NF-kappa-B activation, circadian rhythms, and mTORC1 signaling. Mutations cause a neurodevelopmental disorder with intellectual disability, developmental delay, seizures, and behavioral abnormalities, inherited in an autosomal dominant pattern. The gene is highly constrained against loss-of-function variants (pLI 0.98, LOEUF 0.31), indicating that haploinsufficiency is likely not tolerated in the general population.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismADLOEUF 0.311 OMIM phenotype
Clinical SummaryFBXW11
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.98). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.31LOEUF
pLI 0.976
Z-score 4.56
OE 0.15 (0.080.31)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
3.96Z-score
OE missense 0.37 (0.320.43)
115 obs / 311.5 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.15 (0.080.31)
00.351.4
Missense OE0.37 (0.320.43)
00.61.4
Synonymous OE0.95
01.21.6
LoF obs/exp: 5 / 33.5Missense obs/exp: 115 / 311.5Syn Z: 0.39
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongFBXW11-related syndromic intellectual disabilityOTHERAD
DN
0.3694th %ile
GOF
0.4776th %ile
LOF
0.70top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.31

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FBXW11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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