FBXL5

Chr 4

F-box and leucine rich repeat protein 5

Also known as: FBL4, FBL5, FLR1

The protein functions as a component of SCF ubiquitin ligase complexes that regulate iron homeostasis by promoting degradation of iron regulatory proteins, particularly under conditions of iron sufficiency and oxidative stress. Mutations in this highly constrained gene cause autosomal recessive neurodevelopmental disorders characterized by intellectual disability, developmental delay, and seizures. The gene shows extreme intolerance to loss-of-function variants, indicating that even partial loss of protein function can have significant clinical consequences.

Summary from RefSeq, UniProt
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0
Active trials
14
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.24
LOEUF· LoF intol.
LOF
Mechanism· predicted
Clinical SummaryFBXL5
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.24LOEUF
pLI 0.999
Z-score 4.77
OE 0.09 (0.040.24)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.85Z-score
OE missense 0.72 (0.650.80)
256 obs / 353.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.09 (0.040.24)
00.351.4
Missense OE0.72 (0.650.80)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 3 / 32.2Missense obs/exp: 256 / 353.8Syn Z: -0.16
DN
0.3296th %ile
GOF
0.3491th %ile
LOF
0.66top 25%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.24

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FBXL5 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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