FANCF

Chr 11AR

FA complementation group F

Also known as: FAF

The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group F. [provided by RefSeq, Jul 2008]

Primary Disease Associations & Inheritance

Fanconi anemia, complementation group FMIM #603467
AR
Fanconi anemia, complementation group FMIM #603467
AR
UniProtFanconi anemia complementation group F
3
Active trials
0
Pathogenic / LP
0
ClinVar variants
8
Pubs (1 yr)
-1.8
Missense Z
1.52
LOEUF
Clinical SummaryFANCF
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Gene-Disease Validity (ClinGen)
Fanconi anemia complementation group F · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.00) despite low pLI — interpret in context.
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Clinical Trials
3 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.52LOEUF
pLI 0.459
Z-score 1.16
OE 0.00 (0.001.52)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-1.83Z-score
OE missense 1.38 (1.241.53)
257 obs / 186.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.00 (0.001.52)
00.351.4
Missense OE1.38 (1.241.53)
00.61.4
Synonymous OE1.43
01.21.6
LoF obs/exp: 0 / 1.6Missense obs/exp: 257 / 186.8Syn Z: -3.08

ClinVar Variant Classifications

0 submitted variants in ClinVar

FANCF · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Gene2Phenotype Curations

FANCF-related Fanconi anemia

definitive
ARLoss Of FunctionAbsent Gene Product
Dev. DisordersSkin
G2P ↗

Gene2Phenotype curations · DECIPHER consortium patient cohort (public variants) · deciphergenomics.org

Clinical Literature
Landmark / reviewRecent case evidence