FAM53B

Chr 10

family with sequence similarity 53 member B

Also known as: KIAA0140, bA12J10.2, smp

Involved in positive regulation of canonical Wnt signaling pathway. Located in nucleus. [provided by Alliance of Genome Resources, Jul 2025]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
1
Pubs (1 yr)
P/LP submissions
P/LP missense
0.42
LOEUF
LOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.42LOEUF
pLI 0.855
Z-score 3.13
OE 0.13 (0.050.42)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.21Z-score
OE missense 0.79 (0.710.89)
215 obs / 271.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.13 (0.050.42)
00.351.4
Missense OE?0.79 (0.710.89)
00.61.4
Synonymous OE?1.13
01.21.6
LoF obs/exp: 2 / 15.1Missense obs/exp: 215 / 271.2Syn Z: -1.09

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FAM53B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →