FAM3A

Chr X

FAM3 metabolism regulating signaling molecule A

Also known as: 2.19, DLD, DXS560S, XAP-7

This gene encodes a cytokine-like protein. The expression of this gene may be regulated by peroxisome proliferator-activated receptor gamma, and the encoded protein may be involved in the regulation of glucose and lipid metabolism. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
15
Pubs (1 yr)
P/LP submissions
P/LP missense
0.60
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.60LOEUF
pLI 0.669
Z-score 2.27
OE 0.13 (0.040.60)
Moderately constrained

Typical tolerance to LoF variation

Missense Constraint?
0.93Z-score
OE missense 0.75 (0.620.90)
79 obs / 105.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.13 (0.040.60)
00.351.4
Missense OE?0.75 (0.620.90)
00.61.4
Synonymous OE?1.16
01.21.6
LoF obs/exp: 1 / 7.9Missense obs/exp: 79 / 105.8Syn Z: -0.85

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FAM3A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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