FAM20C

Chr 7AR

FAM20C golgi associated secretory pathway kinase

Also known as: DMP-4, DMP4, G-CK, GEF-CK, RNS

This gene encodes a member of the family of secreted protein kinases. The encoded protein binds calcium and phosphorylates proteins involved in bone mineralization. Mutations in this gene are associated with the autosomal recessive disorder Raine syndrome. [provided by RefSeq, Apr 2014]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Raine syndromeMIM #259775
AR

Clinical highlights

Gene-disease validity (ClinGen)
lethal osteosclerotic bone dysplasia · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
37
Pubs (1 yr)
P/LP submissions
P/LP missense
0.49
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.49LOEUF
pLI 0.315
Z-score 3.30
OE 0.23 (0.120.49)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.02Z-score
OE missense 0.84 (0.760.93)
263 obs / 314.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.23 (0.120.49)
00.351.4
Missense OE?0.84 (0.760.93)
00.61.4
Synonymous OE?1.04
01.21.6
LoF obs/exp: 5 / 21.5Missense obs/exp: 263 / 314.0Syn Z: -0.39

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

FAM20C · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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