EXT2

Chr 11ADAR

exostosin glycosyltransferase 2

Also known as: SOTV, SSMS

This gene encodes one of two glycosyltransferases involved in the chain elongation step of heparan sulfate biosynthesis. Mutations in this gene cause the type II form of multiple exostoses. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Exostoses, multiple, type 2MIM #133701
AD
Exostoses, multiple, type 2MIM #133701
AD
Seizures, scoliosis, and macrocephaly syndromeMIM #616682
AR
UniProtHereditary multiple exostoses 2

Clinical highlights

Gene-disease validity (ClinGen)
exostoses, multiple, type 2 · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
43
Pubs (1 yr)
P/LP submissions
P/LP missense
0.77
LOEUF
LOF
Mechanism· G2P
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GeneReview available — EXT2
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.77LOEUF
pLI 0.000
Z-score 2.73
OE 0.53 (0.380.77)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.64Z-score
OE missense 0.91 (0.840.99)
394 obs / 431.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.53 (0.380.77)
00.351.4
Missense OE?0.91 (0.840.99)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 21 / 39.5Missense obs/exp: 394 / 431.4Syn Z: -0.24

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

EXT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.