EXOSC7

Chr 3

exosome component 7

Also known as: EAP1, RRP42, Rrp42p, hRrp42p, p8

The protein is a non-catalytic component of the RNA exosome complex that degrades and processes various RNA species in both the nucleus and cytoplasm, including mRNA turnover and maturation of stable RNAs like rRNA and snRNA. Mutations in this gene cause autosomal recessive developmental delay, microcephaly, and cerebellar hypoplasia with onset in infancy. The gene shows relatively low constraint to loss-of-function variation based on population data.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.09
Clinical SummaryEXOSC7
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
7 unique Pathogenic / Likely Pathogenic· 45 VUS of 66 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.09LOEUF
pLI 0.000
Z-score 1.30
OE 0.64 (0.401.09)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.24Z-score
OE missense 1.05 (0.931.19)
175 obs / 166.4 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.64 (0.401.09)
00.351.4
Missense OE1.05 (0.931.19)
00.61.4
Synonymous OE0.78
01.21.6
LoF obs/exp: 10 / 15.5Missense obs/exp: 175 / 166.4Syn Z: 1.43
DN
0.6356th %ile
GOF
0.5072th %ile
LOF
0.3648th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

66 submitted variants in ClinVar

Classification Summary

Pathogenic6
Likely Pathogenic1
VUS45
6
Pathogenic
1
Likely Pathogenic
45
VUS

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
6
0
6
Likely Pathogenic
0
0
1
0
1
VUS
0
42
3
0
45
Likely Benign
0
0
0
0
0
Benign
0
0
0
0
0
Total04210052

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

EXOSC7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found