ESX1

Chr XADAR

ESX homeobox 1

Also known as: ESX1L, ESXR1

This gene encodes a dual-function 65 kDa protein that undergoes proteolytic cleavage to produce a 45 kDa N-terminal fragment with a paired-like homeodomain and a 20 kDa C-terminal fragment with a proline-rich domain. The C-terminal fragment localizes to the cytoplasm while the N-terminal fragment localizes exclusively to the nucleus. In contrast to human, the mouse homolog has a novel PN/PF motif in the C-terminus and is paternally imprinted in placental tissue. This gene likely plays a role in placental development and spermatogenesis. [provided by RefSeq, Jan 2010]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Amelogenesis imperfecta, type IVMIM #104510
AD
Trichodontoosseous syndromeMIM #190320
AD
Metaphyseal anadysplasia 2MIM #613073
AR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
0
Pubs (1 yr)
P/LP submissions
P/LP missense
0.75
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.75LOEUF
pLI 0.527
Z-score 1.96
OE 0.16 (0.060.75)
Moderately constrained

Typical tolerance to LoF variation

Missense Constraint?
-0.04Z-score
OE missense 1.01 (0.891.15)
157 obs / 155.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.16 (0.060.75)
00.351.4
Missense OE?1.01 (0.891.15)
00.61.4
Synonymous OE?1.44
01.21.6
LoF obs/exp: 1 / 6.3Missense obs/exp: 157 / 155.7Syn Z: -2.80

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ESX1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →