ERLEC1

Chr 2

endoplasmic reticulum lectin 1

Also known as: C2orf30, CIM, CL24936, CL25084, HEL117, XTP3-B, XTP3TPB

This gene encodes a resident endoplasmic reticulum (ER) protein that functions in N-glycan recognition. This protein is thought to be involved in ER-associated degradation via its interaction with the membrane-associated ubiquitin ligase complex. It also functions as a regulator of multiple cellular stress-response pathways in a manner that promotes metastatic cell survival. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 21. [provided by RefSeq, Aug 2011]

0
Active trials
2
Pubs (1 yr)
14
P/LP submissions
29%
P/LP missense
0.74
LOEUF
Mechanism
Clinical SummaryERLEC1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
14 unique Pathogenic / Likely Pathogenic· 70 VUS of 115 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.74LOEUF
pLI 0.000
Z-score 2.64
OE 0.47 (0.310.74)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.64Z-score
OE missense 0.89 (0.800.99)
226 obs / 254.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.47 (0.310.74)
00.351.4
Missense OE0.89 (0.800.99)
00.61.4
Synonymous OE1.07
01.21.6
LoF obs/exp: 14 / 29.5Missense obs/exp: 226 / 254.8Syn Z: -0.56

ClinVar Variant Classifications

115 submitted variants in ClinVar

Classification Summary

Pathogenic9
Likely Pathogenic5
VUS70
Likely Benign4
Benign2
9
Pathogenic
5
Likely Pathogenic
70
VUS
4
Likely Benign
2
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
9
0
9
Likely Pathogenic
0
4
1
0
5
VUS
0
68
2
0
70
Likely Benign
0
3
1
0
4
Benign
0
0
1
1
2
Total07514190

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ERLEC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found