EP300

Chr 22

EP300 lysine acetyltransferase

Also known as: KAT3B, MKHK2, RSTS2, p300

This gene encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. It functions as histone acetyltransferase that regulates transcription via chromatin remodeling and is important in the processes of cell proliferation and differentiation. It mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein. This gene has also been identified as a co-activator of HIF1A (hypoxia-inducible factor 1 alpha), and thus plays a role in the stimulation of hypoxia-induced genes such as VEGF. Defects in this gene are a cause of Rubinstein-Taybi syndrome and may also play a role in epithelial cancer. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtRubinstein-Taybi syndrome 2
UniProtMenke-Hennekam syndrome 2

Clinical highlights

Gene-disease validity (ClinGen)
Rubinstein-Taybi syndrome due to EP300 haploinsufficiency · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
3
Active trials
362
Pubs (1 yr)
P/LP submissions
P/LP missense
0.10
LOEUF· LoF intol.
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.10LOEUF
pLI 1.000
Z-score 9.65
OE 0.05 (0.030.10)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
2.03Z-score
OE missense 0.84 (0.800.89)
1119 obs / 1327.6 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.05 (0.030.10)
00.351.4
Missense OE?0.84 (0.800.89)
00.61.4
Synonymous OE?1.42
01.21.6
LoF obs/exp: 6 / 120.1Missense obs/exp: 1119 / 1327.6Syn Z: -7.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

EP300 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.