EMC2

Chr 8

ER membrane protein complex subunit 2

Also known as: KIAA0103, TTC35

EMC2 encodes a component of the endoplasmic reticulum membrane protein complex (EMC) that facilitates the insertion of newly synthesized membrane proteins into ER membranes, particularly those with weakly hydrophobic transmembrane domains. Mutations cause a severe neurodevelopmental disorder with early infantile onset characterized by intellectual disability, developmental delay, seizures, and brain malformations. This condition follows an autosomal recessive inheritance pattern.

Summary from RefSeq, UniProt
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0
Active trials
13
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.67
LOEUF
DN
Mechanism· predicted
Clinical SummaryEMC2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.67LOEUF
pLI 0.003
Z-score 2.71
OE 0.37 (0.220.67)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.62Z-score
OE missense 0.86 (0.740.99)
128 obs / 149.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.37 (0.220.67)
00.351.4
Missense OE0.86 (0.740.99)
00.61.4
Synonymous OE1.07
01.21.6
LoF obs/exp: 8 / 21.6Missense obs/exp: 128 / 149.3Syn Z: -0.41
DN
0.7033th %ile
GOF
0.6247th %ile
LOF
0.2678th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

EMC2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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