ELOVL1

Chr 1ADAR

ELOVL fatty acid elongase 1

Also known as: CGI-88, IKSHD, Ssc1

ELOVL1 encodes a fatty acid elongase that catalyzes the rate-limiting step in very long-chain fatty acid synthesis, particularly important for producing C24:0 and C24:1 sphingolipids essential for membrane lipids. Mutations cause ichthyotic keratoderma, spasticity, hypomyelination, and dysmorphic facies with both autosomal dominant and autosomal recessive inheritance patterns reported. The gene shows moderate constraint against loss-of-function variants (LOEUF 0.462), reflecting its important role in lipid metabolism affecting skin, nervous system, and craniofacial development.

OMIMResearchSummary from RefSeq, OMIM, UniProt
DNmechanismAD/ARLOEUF 0.461 OMIM phenotype
Clinical SummaryELOVL1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.68) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.46LOEUF
pLI 0.679
Z-score 3.12
OE 0.18 (0.080.46)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.81Z-score
OE missense 0.59 (0.500.71)
94 obs / 158.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.18 (0.080.46)
00.351.4
Missense OE0.59 (0.500.71)
00.61.4
Synonymous OE1.29
01.21.6
LoF obs/exp: 3 / 16.8Missense obs/exp: 94 / 158.0Syn Z: -1.72
DN
0.6550th %ile
GOF
0.6052th %ile
LOF
0.3939th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ELOVL1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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