ELAC1

Chr 18

elaC ribonuclease Z 1

Also known as: D29

The ELAC1 protein is a zinc phosphodiesterase that processes tRNA 3'-ends and removes cyclic phosphates from damaged tRNAs as part of ribosome-associated quality control pathways. The gene is highly constrained against loss-of-function variants (pLI 0.88, LOEUF 0.42), suggesting mutations would likely cause severe disease, though specific associated disorders have not yet been established. Based on the constraint metrics, pathogenic variants would likely follow an autosomal dominant inheritance pattern.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
0
Pubs (1 yr)
43
P/LP submissions
0%
P/LP missense
0.42
LOEUF
Mechanism
Clinical SummaryELAC1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.88) — some intolerance to loss-of-function variants.
📋
ClinVar Variants
41 unique Pathogenic / Likely Pathogenic· 48 VUS of 97 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.42LOEUF
pLI 0.881
Z-score 2.84
OE 0.09 (0.030.42)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
0.44Z-score
OE missense 0.91 (0.811.03)
177 obs / 194.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.09 (0.030.42)
00.351.4
Missense OE0.91 (0.811.03)
00.61.4
Synonymous OE0.88
01.21.6
LoF obs/exp: 1 / 11.3Missense obs/exp: 177 / 194.1Syn Z: 0.81

ClinVar Variant Classifications

97 submitted variants in ClinVar

Classification Summary

Pathogenic40
Likely Pathogenic1
VUS48
Likely Benign1
40
Pathogenic
1
Likely Pathogenic
48
VUS
1
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
40
0
40
Likely Pathogenic
0
0
1
0
1
VUS
0
45
3
0
48
Likely Benign
0
1
0
0
1
Benign
0
0
0
0
0
Total04644090

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ELAC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →