EDEM3

Chr 1

ER degradation enhancing alpha-mannosidase like protein 3

Also known as: C1orf22, CDG2V

Quality control in the endoplasmic reticulum (ER) ensures that only properly folded proteins are retained in the cell through recognition and degradation of misfolded or unassembled proteins. EDEM3 belongs to a group of proteins that accelerate degradation of misfolded glycoproteins in the ER (Hirao et al., 2006 [PubMed 16431915]).[supplied by OMIM, Mar 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtCongenital disorder of glycosylation 2V

Clinical highlights

Gene-disease validity (ClinGen)
congenital disorder of glycosylation, type 2v · ARStrongappropriate for clinical testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.46
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.46LOEUF
pLI 0.002
Z-score 4.48
OE 0.30 (0.200.46)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.22Z-score
OE missense 0.84 (0.780.92)
409 obs / 484.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.30 (0.200.46)
00.351.4
Missense OE?0.84 (0.780.92)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 14 / 47.2Missense obs/exp: 409 / 484.4Syn Z: 1.17

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

EDEM3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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