EBP

Chr XXLDXLR

EBP cholestenol delta-isomerase

Also known as: CDPX2, CHO2, CPX, CPXD, D8D7I, MEND

The protein encoded by this gene is an integral membrane protein of the endoplasmic reticulum. It is a high affinity binding protein for the antiischemic phenylalkylamine Ca2+ antagonist [3H]emopamil and the photoaffinity label [3H]azidopamil. It is similar to sigma receptors and may be a member of a superfamily of high affinity drug-binding proteins in the endoplasmic reticulum of different tissues. This protein shares structural features with bacterial and eukaryontic drug transporting proteins. It has four putative transmembrane segments and contains two conserved glutamate residues which may be involved in the transport of cationic amphiphilics. Another prominent feature of this protein is its high content of aromatic amino acid residues (>23%) in its transmembrane segments. These aromatic amino acid residues have been suggested to be involved in the drug transport by the P-glycoprotein. Mutations in this gene cause Chondrodysplasia punctata 2 (CDPX2; also known as Conradi-Hunermann syndrome). [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Chondrodysplasia punctata, X-linked dominantMIM #302960
XLD
MEND syndromeMIM #300960
XLR

Clinical highlights

Gene-disease validity (ClinGen)
MEND syndrome · XLDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.34
LOEUF· LoF intol.
LOF
Mechanism· G2P
📖
GeneReview available — EBP
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.34LOEUF
pLI 0.936
Z-score 2.74
OE 0.00 (0.000.34)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.49Z-score
OE missense 0.57 (0.460.71)
55 obs / 96.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.00 (0.000.34)
00.351.4
Missense OE?0.57 (0.460.71)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 0 / 8.8Missense obs/exp: 55 / 96.3Syn Z: 0.06

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

EBP · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.