DSE

Chr 6

dermatan sulfate epimerase

Also known as: DS-epi1, DSEP, DSEPI, EDSMC2, SART-2, SART2

The protein encoded by this gene is a tumor-rejection antigen. It is localized to the endoplasmic reticulum and functions to convert D-glucuronic acid to L-iduronic acid during the biosynthesis of dermatan sulfate. This antigen possesses tumor epitopes capable of inducing HLA-A24-restricted and tumor-specific cytotoxic T lymphocytes in cancer patients and may be useful for specific immunotherapy. Mutations in this gene cause inmusculocontractural Ehlers-Danlos syndrome. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 9, and a paralogous gene exists on chromosome 18. [provided by RefSeq, Apr 2016]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtEhlers-Danlos syndrome, musculocontractural type 2

Clinical highlights

Gene-disease validity (ClinGen)
Ehlers-Danlos syndrome, musculocontractural type 2 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
239
Pubs (1 yr)
P/LP submissions
P/LP missense
0.38
LOEUF
LOF
Mechanism· G2P
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GeneReview available — DSE
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.38LOEUF
pLI 0.633
Z-score 4.54
OE 0.21 (0.120.38)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.03Z-score
OE missense 0.75 (0.690.82)
393 obs / 523.4 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.21 (0.120.38)
00.351.4
Missense OE?0.75 (0.690.82)
00.61.4
Synonymous OE?0.90
01.21.6
LoF obs/exp: 8 / 38.3Missense obs/exp: 393 / 523.4Syn Z: 1.08

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DSE · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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