DPM3

Chr 1AR

dolichyl-phosphate mannosyltransferase subunit 3, regulatory

Also known as: CDG1O, MDDGB15, MDDGC15

Dolichol-phosphate mannose (Dol-P-Man) serves as a donor of mannosyl residues on the lumenal side of the endoplasmic reticulum (ER). Lack of Dol-P-Man results in defective surface expression of GPI-anchored proteins. Dol-P-Man is synthesized from GDP-mannose and dolichol-phosphate on the cytosolic side of the ER by the enzyme dolichyl-phosphate mannosyltransferase. The protein encoded by this gene is a subunit of dolichyl-phosphate mannosyltransferase and acts as a stabilizer subunit of the dolichyl-phosphate mannosyltransferase complex. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type B, 15MIM #618992
AR
Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 15MIM #612937
AR

Clinical highlights

Gene-disease validity (ClinGen)
DPM3-congenital disorder of glycosylation · ARModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
1.40
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.40LOEUF
pLI 0.233
Z-score 1.14
OE 0.31 (0.111.40)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.42Z-score
OE missense 0.86 (0.701.07)
59 obs / 68.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.31 (0.111.40)
00.351.4
Missense OE?0.86 (0.701.07)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 1 / 3.2Missense obs/exp: 59 / 68.7Syn Z: 0.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DPM3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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