DPH2

Chr 1AR

diphthamide biosynthesis 2

Also known as: DEDSSH2, DPH2L2

The DPH2 protein is required for diphthamide biosynthesis, a post-translational modification of histidine in elongation factor 2, where it facilitates reduction of the iron-sulfur cluster in the DPH1 subunit. Mutations cause autosomal recessive developmental delay with short stature, dysmorphic facial features, and sparse hair. The gene shows low constraint against loss-of-function variants (pLI 0.00001), consistent with its recessive inheritance pattern.

OMIMResearchSummary from RefSeq, OMIM, UniProt
ARLOEUF 0.951 OMIM phenotype
Clinical SummaryDPH2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.95LOEUF
pLI 0.000
Z-score 1.73
OE 0.57 (0.360.95)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.76Z-score
OE missense 0.88 (0.790.97)
261 obs / 297.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.57 (0.360.95)
00.351.4
Missense OE0.88 (0.790.97)
00.61.4
Synonymous OE0.98
01.21.6
LoF obs/exp: 11 / 19.2Missense obs/exp: 261 / 297.9Syn Z: 0.22

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DPH2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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