DPAGT1

Chr 11AR

dolichyl-phosphate N-acetylglucosaminephosphotransferase 1

Also known as: ALG7, CDG-Ij, CDG1J, CMS13, CMSTA2, D11S366, DGPT, DPAGT

The protein encoded by this gene is an enzyme that catalyzes the first step in the dolichol-linked oligosaccharide pathway for glycoprotein biosynthesis. This enzyme belongs to the glycosyltransferase family 4. This protein is an integral membrane protein of the endoplasmic reticulum. The congenital disorder of glycosylation type Ij is caused by mutation in the gene encoding this enzyme. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Congenital disorder of glycosylation, type IjMIM #608093
AR
Myasthenic syndrome, congenital, 13, with tubular aggregatesMIM #614750
AR

Clinical highlights

Gene-disease validity (ClinGen)
DPAGT1-congenital disorder of glycosylation · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
18
Pubs (1 yr)
P/LP submissions
P/LP missense
1.08
LOEUF
LOF
Mechanism· G2P
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GeneReview available — DPAGT1
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.08LOEUF
pLI 0.000
Z-score 1.33
OE 0.64 (0.391.08)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
1.43Z-score
OE missense 0.73 (0.640.83)
156 obs / 214.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.64 (0.391.08)
00.351.4
Missense OE?0.73 (0.640.83)
00.61.4
Synonymous OE?0.85
01.21.6
LoF obs/exp: 10 / 15.7Missense obs/exp: 156 / 214.8Syn Z: 1.14

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DPAGT1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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