DNAH17

Chr 17AR

dynein axonemal heavy chain 17

Also known as: DNAHL1, DNEL2, SPGF39

DNAH17 encodes a heavy chain component of outer dynein arms that generates force for microtubule-based movement and is essential for sperm flagellar assembly and beating. Autosomal recessive mutations cause spermatogenic failure 39, a form of male infertility due to impaired sperm motility. The pathogenic mechanism involves gain-of-function mutations that disrupt normal dynein motor protein function in sperm flagella.

Summary from RefSeq, OMIM, UniProt, Mechanism
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Primary Disease Associations & Inheritance

Spermatogenic failure 39MIM #618643
AR
0
Active trials
13
Pubs (1 yr)
16
P/LP submissions
0%
P/LP missense
0.75
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryDNAH17
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Gene-Disease Validity (ClinGen)
spermatogenic failure 39 · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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ClinVar Variants
15 unique Pathogenic / Likely Pathogenic· 461 VUS of 900 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.75LOEUF
pLI 0.000
Z-score 4.67
OE 0.65 (0.560.75)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-3.13Z-score
OE missense 1.17 (1.141.21)
3061 obs / 2611.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.65 (0.560.75)
00.351.4
Missense OE1.17 (1.141.21)
00.61.4
Synonymous OE1.40
01.21.6
LoF obs/exp: 134 / 206.3Missense obs/exp: 3061 / 2611.2Syn Z: -10.53
DN
0.6259th %ile
GOF
0.7028th %ile
LOF
0.2189th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

900 submitted variants in ClinVar

Classification Summary

Pathogenic3
Likely Pathogenic12
VUS461
Likely Benign106
Benign256
Conflicting2
3
Pathogenic
12
Likely Pathogenic
461
VUS
106
Likely Benign
256
Benign
2
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
3
0
3
Likely Pathogenic
9
0
3
0
12
VUS
1
459
1
0
461
Likely Benign
0
18
16
72
106
Benign
0
32
189
35
256
Conflicting
2
Total10509212107840

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

DNAH17 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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