DLG1

Chr 3

discs large MAGUK scaffold protein 1

Also known as: DLGH1, SAP-97, SAP97, hdlg

This gene encodes an essential multidomain scaffolding protein that recruits channels, receptors and signaling molecules to discrete plasma membrane domains and maintains cell-cell adhesion in polarized cells. Mutations cause intellectual disability with seizures, and the gene shows autosomal dominant inheritance. The gene is highly constrained against loss-of-function mutations, reflecting its critical role in normal development and neuronal function.

Summary from RefSeq, UniProt
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0
Active trials
19
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.29
LOEUF· LoF intol.
LOF
Mechanism· predicted
Clinical SummaryDLG1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.99). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.29LOEUF
pLI 0.994
Z-score 5.93
OE 0.17 (0.100.29)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.50Z-score
OE missense 0.81 (0.750.88)
403 obs / 496.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.17 (0.100.29)
00.351.4
Missense OE0.81 (0.750.88)
00.61.4
Synonymous OE0.85
01.21.6
LoF obs/exp: 10 / 59.3Missense obs/exp: 403 / 496.8Syn Z: 1.54
DN
0.4190th %ile
GOF
0.6150th %ile
LOF
0.70top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.29

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DLG1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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