DICER1

Chr 14AD

dicer 1, ribonuclease III

Double-stranded RNA (dsRNA) endoribonuclease playing a central role in short dsRNA-mediated post-transcriptional gene silencing. Cleaves naturally occurring long dsRNAs and short hairpin pre-microRNAs (miRNA) into fragments of twenty-one to twenty-three nucleotides with 3' overhang of two nucleotides, producing respectively short interfering RNAs (siRNA) and mature microRNAs. SiRNAs and miRNAs serve as guide to direct the RNA-induced silencing complex (RISC) to complementary RNAs to degrade them or prevent their translation. Gene silencing mediated by siRNAs, also called RNA interference, controls the elimination of transcripts from mobile and repetitive DNA elements of the genome but also the degradation of exogenous RNA of viral origin for instance. The miRNA pathway on the other side is a mean to specifically regulate the expression of target genes

Primary Disease Associations & Inheritance

GLOW syndrome, somatic mosaicMIM #618272
Goiter, multinodular 1, with or without Sertoli-Leydig cell tumorsMIM #138800
AD
Pleuropulmonary blastomaMIM #601200
AD
Rhabdomyosarcoma, embryonal, 2MIM #180295
UniProtGoiter multinodular 1, with or without Sertoli-Leydig cell tumors
UniProtGlobal developmental delay, lung cysts, overgrowth, and Wilms tumor
0
ClinVar variants
0
Pathogenic / LP
1.00
pLI score· haploinsufficient
6
Active trials
Clinical SummaryDICER1
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Gene-Disease Validity (ClinGen)
DICER1-related tumor predisposition · ADDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.
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Clinical Trials
6 active or recruiting trials — potential therapeutic options may be available
Some data sources returned errors (1)

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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?LOEUF (Loss-of-function Observed/Expected Upper bound Fraction) is the upper bound of the 90% CI for LoF OE — the preferred gnomAD v4 metric. Lower = more intolerant to LoF. LOEUF < 0.35 = highly constrained.
0.17LOEUF
pLI 1.000
Z-score 7.85
OE 0.09 (0.050.17)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?Missense Z-score: standard deviations fewer missense variants observed vs. expected. Z > 3.09 (p < 0.001) = gene does not tolerate missense variation. OE missense < 0.6 is also considered constrained.
4.23Z-score
OE missense 0.62 (0.580.67)
626 obs / 1002.6 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?Shaded band = 90% confidence interval. Vertical tick = point estimate. Grey threshold line = gnomAD constraint cutoff for that variant class.
LoF OE?Ratio of observed to expected LoF variants. Upper CI bound (LOEUF) ≤ 0.35 = strong LoF constraint signal.0.09 (0.050.17)
00.351.4
Missense OE?Ratio of observed to expected missense variants. OE ≤ 0.6 = fewer missense variants than expected by chance.0.62 (0.580.67)
00.61.4
Synonymous OE?Control metric — synonymous variants are largely neutral and expected near OE = 1.0. Significant deviation may indicate annotation issues.1.01
01.21.6
LoF obs/exp: 8 / 87.0Missense obs/exp: 626 / 1002.6Syn Z: -0.11

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DICER1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Gene2Phenotype Curations

DICER1-related tumor predisposition

definitive
ADLoss Of FunctionAbsent Gene Product, Altered Gene Product Structure
Cancer
G2P ↗

Gene2Phenotype curations · DECIPHER consortium patient cohort (public variants) · deciphergenomics.org

OMIM — Genotype-Phenotype Relationships

1 OMIM entry

GLOW syndrome, somatic mosaic

MIM #618272

Molecular basis of disorder known

Goiter, multinodular 1, with or without Sertoli-Leydig cell tumors

MIM #138800

Molecular basis of disorder known

Autosomal dominant

Pleuropulmonary blastoma

MIM #601200

Molecular basis of disorder known

Autosomal dominant

Rhabdomyosarcoma, embryonal, 2

MIM #180295

Molecular basis of disorder known

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GeneReview available — DICER1
Authoritative clinical overview · NCBI Bookshelf · Recommended first read
Open GeneReview ↗
Clinical Literature
Landmark / reviewRecent case evidence