DHFR2

Chr 3

dihydrofolate reductase 2

Also known as: DHFRL1, DHFRP4

The protein is a key enzyme in mitochondrial folate metabolism that catalyzes dihydrofolate reduction and contributes to thymidylate biosynthesis, preventing uracil accumulation in mitochondrial DNA. Mutations cause autosomal recessive mitochondrial DNA depletion syndrome, which typically presents in infancy with severe neurological deterioration, developmental delays, and multi-organ dysfunction. The gene shows moderate tolerance to loss-of-function variants, consistent with the recessive inheritance pattern observed in affected patients.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.44
Clinical SummaryDHFR2
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.32) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.44LOEUF
pLI 0.225
Z-score 1.10
OE 0.32 (0.111.44)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.60Z-score
OE missense 0.83 (0.691.00)
81 obs / 97.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.32 (0.111.44)
00.351.4
Missense OE0.83 (0.691.00)
00.61.4
Synonymous OE1.18
01.21.6
LoF obs/exp: 1 / 3.1Missense obs/exp: 81 / 97.6Syn Z: -0.83
DN
0.6936th %ile
GOF
0.5563th %ile
LOF
0.2485th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DHFR2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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