DHCR7

Chr 11AR

7-dehydrocholesterol reductase

Also known as: SLOS

DHCR7 encodes an oxidoreductase that catalyzes the final step of cholesterol biosynthesis, converting 7-dehydrocholesterol to cholesterol. Mutations cause Smith-Lemli-Opitz syndrome, an autosomal recessive disorder characterized by intellectual disability, distinctive facial features, syndactyly of the second and third toes, and in severe cases holoprosencephaly, with phenotypic severity ranging from minimal abnormalities with near-normal intelligence to profound developmental delays. The gene shows very low tolerance to loss-of-function variants (pLI near zero), reflecting the critical importance of cholesterol synthesis for normal development.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 1.351 OMIM phenotype
Clinical SummaryDHCR7
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Gene-Disease Validity (ClinGen)
Smith-Lemli-Opitz syndrome · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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Clinical Trials
3 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.35LOEUF
pLI 0.000
Z-score 0.31
OE 0.93 (0.651.35)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.45Z-score
OE missense 1.07 (0.981.18)
322 obs / 300.0 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.93 (0.651.35)
00.351.4
Missense OE1.07 (0.981.18)
00.61.4
Synonymous OE1.21
01.21.6
LoF obs/exp: 20 / 21.5Missense obs/exp: 322 / 300.0Syn Z: -1.88
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveDHCR7-related Smith-Lemli-Opitz syndromeLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6259th %ile
GOF
0.6639th %ile
LOF
0.3455th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DHCR7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
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Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗