DESI2

Chr 1

desumoylating isopeptidase 2

Also known as: C1orf121, CGI-146, DeSI-2, FAM152A, PNAS-4, PPPDE1

The protein functions as a deubiquitinase that removes ubiquitin chains from target proteins and exhibits palmitoyl protein thioesterase activity that removes palmitoyl groups from proteins. Mutations cause autosomal recessive neurodegeneration with brain iron accumulation, typically presenting in childhood with progressive movement disorders and cognitive decline. The gene is highly constrained against loss-of-function variants, indicating that complete loss of protein function is likely pathogenic.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.45
Clinical SummaryDESI2
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.85) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.45LOEUF
pLI 0.848
Z-score 2.73
OE 0.09 (0.030.45)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.91Z-score
OE missense 0.48 (0.390.61)
52 obs / 107.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.09 (0.030.45)
00.351.4
Missense OE0.48 (0.390.61)
00.61.4
Synonymous OE0.94
01.21.6
LoF obs/exp: 1 / 10.6Missense obs/exp: 52 / 107.9Syn Z: 0.31

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DESI2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗