DEFB106B

Chr 8

defensin beta 106B

Also known as: BD-6, DEFB-6

Defensins form a family of antimicrobial and cytotoxic peptides made by neutrophils. Defensins are short, processed peptide molecules that are classified by structure into three groups: alpha-defensins, beta-defensins and theta-defensins. All beta-defensin genes are densely clustered in four to five syntenic chromosomal regions. Chromosome 8p23 contains at least two copies of the duplicated beta-defensin cluster. This duplication results in two identical copies of defensin, beta 106, DEFB106A and DEFB106B, in head-to-head orientation. This gene, DEFB106B, represents the more telomeric copy. [provided by RefSeq, Oct 2014]

0
Active trials
0
Pathogenic / LP
0
ClinVar variants
0
Pubs (1 yr)
0.6
Missense Z
1.91
LOEUF
Clinical SummaryDEFB106B
Population Constraint (gnomAD)
Low constraint (pLI 0.08) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.91LOEUF
pLI 0.081
Z-score -0.24
OE 1.30 (0.301.91)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.57Z-score
OE missense 0.69 (0.471.02)
18 obs / 26.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.30 (0.301.91)
00.351.4
Missense OE0.69 (0.471.02)
00.61.4
Synonymous OE0.40
01.21.6
LoF obs/exp: 1 / 0.8Missense obs/exp: 18 / 26.2Syn Z: 1.50
DN
DN
0.85top 5%
GOF
0.5758th %ile
LOF
0.11100th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

DEFB106B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
Landmark / reviewRecent case evidence
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found