DDX25

Chr 11

DEAD-box helicase 25

Also known as: GRTH

DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of the DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a member of this family. The encoded protein is a gonadotropin-regulated and developmentally expressed testicular RNA helicase. It may serve to maintain testicular functions related to steroidogenesis and spermatogenesis. [provided by RefSeq, Jul 2008]

0
Active trials
2
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.31
LOEUF
DN
Mechanism· predicted
Clinical SummaryDDX25
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.31LOEUF
pLI 0.000
Z-score 0.21
OE 0.96 (0.711.31)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
1.21Z-score
OE missense 0.79 (0.710.89)
211 obs / 266.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.96 (0.711.31)
00.351.4
Missense OE0.79 (0.710.89)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 28 / 29.2Missense obs/exp: 211 / 266.6Syn Z: 0.55
DN
0.74top 25%
GOF
0.6249th %ile
LOF
0.3259th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DDX25 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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