DCDC1

Chr 11

doublecortin domain containing 1

Also known as: DCDC5

The protein encoded by DCDC1 is a microtubule-binding protein that mediates dynein-dependent transport of vesicles to the midbody during cell division. Mutations in this gene cause dyslexia susceptibility, with an autosomal dominant inheritance pattern. This gene shows tolerance to loss-of-function variants (pLI near 0), suggesting the clinical phenotype may involve complex genetic mechanisms.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
0
Pubs (1 yr)
44
P/LP submissions
0%
P/LP missense
1.27
LOEUF
DN
Mechanism· predicted
Clinical SummaryDCDC1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
43 unique Pathogenic / Likely Pathogenic· 83 VUS of 198 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.27LOEUF
pLI 0.000
Z-score 0.76
OE 0.80 (0.521.27)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.04Z-score
OE missense 1.01 (0.891.14)
178 obs / 176.4 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.80 (0.521.27)
00.351.4
Missense OE1.01 (0.891.14)
00.61.4
Synonymous OE1.09
01.21.6
LoF obs/exp: 13 / 16.3Missense obs/exp: 178 / 176.4Syn Z: -0.60
DN
0.6161th %ile
GOF
0.4678th %ile
LOF
0.4429th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

198 submitted variants in ClinVar

Classification Summary

Pathogenic42
Likely Pathogenic1
VUS83
Likely Benign26
Benign29
42
Pathogenic
1
Likely Pathogenic
83
VUS
26
Likely Benign
29
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
42
0
42
Likely Pathogenic
0
0
1
0
1
VUS
0
62
21
0
83
Likely Benign
0
10
8
8
26
Benign
1
15
6
7
29
Total1877815181

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

DCDC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC