DCAF13

Chr 8

DDB1 and CUL4 associated factor 13

Also known as: GM83, HSPC064, Sof1, WDSOF1

The DCAF13 protein functions as a substrate adaptor in the Cul4-RING E3 ubiquitin ligase complex and participates in ribosome biogenesis as part of the small subunit processome that processes 18S rRNA. DCAF13 mutations cause autosomal recessive developmental delay with seizures and intellectual disability, affecting neurological development. The gene plays critical roles in early embryonic development, ribosomal RNA processing, and female meiosis.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 0.85
Clinical SummaryDCAF13
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.85LOEUF
pLI 0.000
Z-score 2.24
OE 0.59 (0.410.85)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.69Z-score
OE missense 1.10 (1.011.20)
382 obs / 345.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.59 (0.410.85)
00.351.4
Missense OE1.10 (1.011.20)
00.61.4
Synonymous OE1.16
01.21.6
LoF obs/exp: 20 / 34.1Missense obs/exp: 382 / 345.9Syn Z: -1.41
DN
0.6938th %ile
GOF
0.5465th %ile
LOF
0.3841th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

DCAF13 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →