CXCL6

Chr 4

C-X-C motif chemokine ligand 6

Also known as: CKA-3, GCP-2, GCP2, SCYB6

The protein encoded by this gene is a member CXC chemokine family. The encoded protein is a chemotactic for neutrophil granulocytes and has antibacterial action against gram-negative and gram-positive bacteria. This gene and other members of the CXC chemokine gene family form a gene cluster in a region of chromosome 4q. [provided by RefSeq, Jun 2020]

ResearchGenerating clinical summary…
1
Active trials
103
Pubs (1 yr)
P/LP submissions
P/LP missense
1.97
LOEUF
DN
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.97LOEUF
pLI 0.000
Z-score -2.30
OE 2.15 (1.101.97)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.68Z-score
OE missense 1.24 (1.031.49)
81 obs / 65.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?2.15 (1.101.97)
00.351.4
Missense OE?1.24 (1.031.49)
00.61.4
Synonymous OE?1.23
01.21.6
LoF obs/exp: 10 / 4.6Missense obs/exp: 81 / 65.5Syn Z: -1.03

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CXCL6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.