CXCL3

Chr 4

C-X-C motif chemokine ligand 3

Also known as: CINC-2b, GRO3, GROg, MIP-2b, MIP2B, SCYB3

The protein is a secreted chemokine that functions as a chemoattractant for neutrophils and signals through the CXCR2 receptor to mediate inflammatory responses. This gene is not loss-of-function intolerant (pLI = 0.0003, LOEUF = 1.848), and no well-established Mendelian diseases have been linked to CXCL3 mutations in current genetic databases.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.85
Clinical SummaryCXCL3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.85LOEUF
pLI 0.000
Z-score -0.17
OE 1.08 (0.551.85)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.72Z-score
OE missense 1.28 (1.051.58)
66 obs / 51.4 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.08 (0.551.85)
00.351.4
Missense OE1.28 (1.051.58)
00.61.4
Synonymous OE1.30
01.21.6
LoF obs/exp: 5 / 4.6Missense obs/exp: 66 / 51.4Syn Z: -1.13
DN
0.78top 25%
GOF
0.5759th %ile
LOF
0.2289th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CXCL3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
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