CTSA

Chr 20

cathepsin A

Also known as: BSVD6, GLB2, GSL, NGBE, PPCA, PPGB

This gene encodes a member of the peptidase S10 family of serine carboxypeptidases. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed to generate two chains that comprise the heterodimeric active enzyme. This enzyme possesses deamidase, esterase and carboxypeptidase activities and acts as a scaffold in the lysosomal multienzyme complex. Mutations in this gene are associated with galactosialidosis. [provided by RefSeq, Nov 2015]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtGalactosialidosis
UniProtBrain small vessel disease 6 with leukoencephalopathy

Clinical highlights

Gene-disease validity (ClinGen)
galactosialidosis · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
84
Pubs (1 yr)
P/LP submissions
P/LP missense
0.88
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.88LOEUF
pLI 0.000
Z-score 2.08
OE 0.59 (0.410.88)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.48Z-score
OE missense 0.92 (0.831.02)
250 obs / 272.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.59 (0.410.88)
00.351.4
Missense OE?0.92 (0.831.02)
00.61.4
Synonymous OE?0.88
01.21.6
LoF obs/exp: 18 / 30.4Missense obs/exp: 250 / 272.3Syn Z: 1.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CTSA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.