CTC1

Chr 17AR

CST telomere replication complex component 1

Also known as: AAF-132, AAF132, C17orf68, CRMCC, tmp494178

This gene encodes a component of the CST complex. This complex plays an essential role in protecting telomeres from degradation. This protein also forms a heterodimer with the CST complex subunit STN1 to form the enzyme alpha accessory factor. This enzyme regulates DNA replication. Mutations in this gene are the cause of cerebroretinal microangiopathy with calcifications and cysts. Alternate splicing results in both coding and non-coding variants. [provided by RefSeq, Mar 2012]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Cerebroretinal microangiopathy with calcifications and cystsMIM #612199
AR

Clinical highlights

Gene-disease validity (ClinGen)
cerebroretinal microangiopathy with calcifications and cysts 1 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
33
Pubs (1 yr)
P/LP submissions
P/LP missense
0.63
LOEUF
LOF
Mechanism· G2P
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GeneReview available — CTC1
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.63LOEUF
pLI 0.000
Z-score 3.97
OE 0.46 (0.340.63)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.50Z-score
OE missense 0.95 (0.891.01)
645 obs / 682.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.46 (0.340.63)
00.351.4
Missense OE?0.95 (0.891.01)
00.61.4
Synonymous OE?1.00
01.21.6
LoF obs/exp: 29 / 63.0Missense obs/exp: 645 / 682.0Syn Z: -0.04

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CTC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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