CSNK2A2
Chr 16casein kinase 2 alpha 2
Also known as: CK2A2, CK2alpha', CSNK2A1
The protein functions as a catalytic subunit of casein kinase 2, a constitutively active serine/threonine kinase that phosphorylates numerous substrates and regulates critical cellular processes including cell cycle progression, apoptosis, transcription, and DNA repair. Loss-of-function mutations in this gene cause autosomal dominant neurodevelopmental disorders, with the gene showing extreme intolerance to loss-of-function variants (pLI = 0.999, LOEUF = 0.184). The pathogenic mechanism involves haploinsufficiency, where reduced kinase activity disrupts the coordinated cellular signaling networks essential for normal neurological development.
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Highly LoF-intolerant (top ~10% of genes)
Highly missense-constrained (top ~0.1%)
The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
CSNK2A2 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
External Resources
Links to major genomics databases and tools