CRPPA

Chr 7

CDP-L-ribitol pyrophosphorylase A

Also known as: ISPD, LGMDR20, MDDGA7, MDDGC7, Nip, hISPD

This gene encodes a 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein. Mutations in this gene are the cause of Walker-Warburg syndrome. Alternate splicing results in multiple transcript variants. [provided by RefSeq, May 2012]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMuscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A7
UniProtMuscular dystrophy-dystroglycanopathy limb-girdle C7

Clinical highlights

Gene-disease validity (ClinGen)
myopathy caused by variation in CRPPA · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
3
Pubs (1 yr)
P/LP submissions
P/LP missense
0.82
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.82LOEUF
pLI 0.000
Z-score 2.14
OE 0.47 (0.280.82)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.41Z-score
OE missense 0.91 (0.811.04)
167 obs / 182.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.47 (0.280.82)
00.351.4
Missense OE?0.91 (0.811.04)
00.61.4
Synonymous OE?1.28
01.21.6
LoF obs/exp: 9 / 19.1Missense obs/exp: 167 / 182.7Syn Z: -1.78

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CRPPA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.