CRBN

Chr 3AR

cereblon

Also known as: MRT2, MRT2A

CRBN encodes cereblon, a substrate recognition component of a DCX E3 ubiquitin ligase complex that mediates proteasomal degradation of regulatory proteins and maintains presynaptic glutamate release by regulating calcium-activated potassium channels in excitatory neurons. Mutations cause autosomal recessive intellectual developmental disorder, affecting cognitive functions including memory and learning. The gene shows very low constraint against loss-of-function variants (pLI 0.0003), consistent with its recessive inheritance pattern where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 0.641 OMIM phenotype
Clinical SummaryCRBN
🧬
Gene-Disease Validity (ClinGen)
intellectual disability · ARModerate

Moderate evidence — consider for supplementary testing

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
79 unique Pathogenic / Likely Pathogenic· 32 VUS of 132 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.64LOEUF
pLI 0.000
Z-score 3.01
OE 0.39 (0.240.64)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.04Z-score
OE missense 1.01 (0.911.12)
241 obs / 239.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.39 (0.240.64)
00.351.4
Missense OE1.01 (0.911.12)
00.61.4
Synonymous OE1.23
01.21.6
LoF obs/exp: 11 / 28.3Missense obs/exp: 241 / 239.2Syn Z: -1.64

ClinVar Variant Classifications

132 submitted variants in ClinVar

Classification Summary

Pathogenic65
Likely Pathogenic14
VUS32
Likely Benign8
Benign8
Conflicting5
65
Pathogenic
14
Likely Pathogenic
32
VUS
8
Likely Benign
8
Benign
5
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
4
0
61
0
65
Likely Pathogenic
5
2
7
0
14
VUS
2
12
18
0
32
Likely Benign
0
1
1
6
8
Benign
0
0
3
5
8
Conflicting
5
Total11159011132

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

CRBN · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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