COX4I1

Chr 16AR

cytochrome c oxidase subunit 4I1

Also known as: COX IV-1, COX4, COX4-1, COXIV, COXIV-1, MC4DN16

Cytochrome c oxidase (COX) is the terminal enzyme of the mitochondrial respiratory chain. It is a multi-subunit enzyme complex that couples the transfer of electrons from cytochrome c to molecular oxygen and contributes to a proton electrochemical gradient across the inner mitochondrial membrane. The complex consists of 13 mitochondrial- and nuclear-encoded subunits. The mitochondrially-encoded subunits perform the electron transfer and proton pumping activities. The functions of the nuclear-encoded subunits are unknown but they may play a role in the regulation and assembly of the complex. This gene encodes the nuclear-encoded subunit IV isoform 1 of the human mitochondrial respiratory chain enzyme. It is located at the 3' of the NOC4 (neighbor of COX4) gene in a head-to-head orientation, and shares a promoter with it. Pseudogenes related to this gene are located on chromosomes 13 and 14. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Mitochondrial complex IV deficiency, nuclear type 16MIM #619060
AR

Clinical highlights

Gene-disease validity (ClinGen)
Leigh syndrome · ARLimitednot for standalone diagnostic reporting2 gene-disease associations curated in total
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
31
Pubs (1 yr)
P/LP submissions
P/LP missense
0.68
LOEUF
DN
Mechanism· predicted
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GeneReview available — COX4I1
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.68LOEUF
pLI 0.394
Z-score 2.21
OE 0.22 (0.090.68)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.17Z-score
OE missense 1.05 (0.901.23)
112 obs / 106.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.22 (0.090.68)
00.351.4
Missense OE?1.05 (0.901.23)
00.61.4
Synonymous OE?1.11
01.21.6
LoF obs/exp: 2 / 9.3Missense obs/exp: 112 / 106.9Syn Z: -0.54

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

COX4I1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.