COPB2

Chr 3ARAD

coat protein complex I subunit beta 2

Also known as: MCPH19, OPDD, beta'-COP

The Golgi coatomer complex (see MIM 601924) constitutes the coat of nonclathrin-coated vesicles and is essential for Golgi budding and vesicular trafficking. It consists of 7 protein subunits, including COPB2.[supplied by OMIM, Jul 2002]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Microcephaly 19, primary, autosomal recessiveMIM #617800
AR
Osteoporosis, childhood- or juvenile-onset, with developmental delayMIM #619884
AD

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
15
Pubs (1 yr)
P/LP submissions
P/LP missense
0.09
LOEUF· LoF intol.
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.09LOEUF
pLI 1.000
Z-score 6.64
OE 0.02 (0.010.09)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
2.56Z-score
OE missense 0.67 (0.610.73)
318 obs / 475.2 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.02 (0.010.09)
00.351.4
Missense OE?0.67 (0.610.73)
00.61.4
Synonymous OE?0.91
01.21.6
LoF obs/exp: 1 / 53.3Missense obs/exp: 318 / 475.2Syn Z: 0.95

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

COPB2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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