COMMD5

Chr 8

COMM domain containing 5

Also known as: HCARG, HT002

COMMD5 encodes a scaffold protein in the commander complex that is essential for endosomal recycling of transmembrane cargos and is involved in kidney proximal tubule morphogenesis. Mutations in COMMD5 have not been definitively associated with human disease in the provided data. The gene shows low constraint against loss-of-function variants (pLI 0.00001, LOEUF 1.81), suggesting haploinsufficiency may be tolerated.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
2
Pubs (1 yr)
54
P/LP submissions
0%
P/LP missense
1.81
LOEUF
Mechanism
Clinical SummaryCOMMD5
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
54 unique Pathogenic / Likely Pathogenic· 131 VUS of 196 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.81LOEUF
pLI 0.000
Z-score -0.20
OE 1.09 (0.611.81)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.47Z-score
OE missense 0.89 (0.771.03)
122 obs / 137.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.09 (0.611.81)
00.351.4
Missense OE0.89 (0.771.03)
00.61.4
Synonymous OE0.96
01.21.6
LoF obs/exp: 7 / 6.4Missense obs/exp: 122 / 137.3Syn Z: 0.26

ClinVar Variant Classifications

196 submitted variants in ClinVar

Classification Summary

Pathogenic49
Likely Pathogenic5
VUS131
Likely Benign7
49
Pathogenic
5
Likely Pathogenic
131
VUS
7
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
49
0
49
Likely Pathogenic
0
0
5
0
5
VUS
0
120
11
0
131
Likely Benign
0
7
0
0
7
Benign
0
0
0
0
0
Total0127650192

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

COMMD5 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC