COMMD3

Chr 10

COMM domain containing 3

Also known as: BUP, C10orf8

COMMD3 encodes a scaffold protein in the commander complex that is essential for endosomal recycling of transmembrane cargos and modulates sodium transport in epithelial cells by regulating amiloride-sensitive sodium channel expression. The gene shows low constraint to loss-of-function variation (pLI 0.00003, LOEUF 1.14), and no established human disease associations have been reported to date. Additional research is needed to determine if COMMD3 variants cause neurological or other clinical phenotypes.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
4
Pubs (1 yr)
9
P/LP submissions
0%
P/LP missense
1.14
LOEUF
Mechanism
Clinical SummaryCOMMD3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
9 unique Pathogenic / Likely Pathogenic· 11 VUS of 23 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.14LOEUF
pLI 0.000
Z-score 1.20
OE 0.65 (0.391.14)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.35Z-score
OE missense 1.10 (0.941.28)
113 obs / 103.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.65 (0.391.14)
00.351.4
Missense OE1.10 (0.941.28)
00.61.4
Synonymous OE1.36
01.21.6
LoF obs/exp: 9 / 13.8Missense obs/exp: 113 / 103.1Syn Z: -1.73

ClinVar Variant Classifications

23 submitted variants in ClinVar

Classification Summary

Pathogenic8
Likely Pathogenic1
VUS11
Likely Benign1
Benign1
8
Pathogenic
1
Likely Pathogenic
11
VUS
1
Likely Benign
1
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
8
0
8
Likely Pathogenic
0
0
1
0
1
VUS
0
8
3
0
11
Likely Benign
0
1
0
0
1
Benign
0
0
1
0
1
Total0913022

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

COMMD3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →