COL6A3

Chr 2ADAR

collagen type VI alpha 3 chain

Also known as: BTHLM1, BTHLM1C, DYT27, UCMD1, UCMD1C

This gene encodes the alpha-3 chain, one of the three alpha chains of type VI collagen, a beaded filament collagen found in most connective tissues. The alpha-3 chain of type VI collagen is much larger than the alpha-1 and -2 chains. This difference in size is largely due to an increase in the number of subdomains, similar to von Willebrand Factor type A domains, that are found in the amino terminal globular domain of all the alpha chains. These domains have been shown to bind extracellular matrix proteins, an interaction that explains the importance of this collagen in organizing matrix components. Mutations in the type VI collagen genes are associated with Bethlem myopathy, a rare autosomal dominant proximal myopathy with early childhood onset. Mutations in this gene are also a cause of Ullrich congenital muscular dystrophy, also referred to as Ullrich scleroatonic muscular dystrophy, an autosomal recessive congenital myopathy that is more severe than Bethlem myopathy. Multiple transcript variants have been identified, but the full-length nature of only some of these variants has been described. [provided by RefSeq, Jun 2009]

OMIMResearchGenerating clinical summary…
LOFmechanismAD/ARLOEUF 0.563 OMIM phenotypes
Clinical SummaryCOL6A3
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Gene-Disease Validity (ClinGen)
collagen 6-related myopathy · ADDefinitive

Definitive — sufficient evidence for diagnostic panels

3 total gene-disease associations curated

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.56LOEUF
pLI 0.000
Z-score 5.65
OE 0.45 (0.360.56)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
-0.61Z-score
OE missense 1.04 (1.001.08)
1908 obs / 1835.0 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.45 (0.360.56)
00.351.4
Missense OE?1.04 (1.001.08)
00.61.4
Synonymous OE?1.10
01.21.6
LoF obs/exp: 55 / 122.5Missense obs/exp: 1908 / 1835.0Syn Z: -2.16
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveCOL6A3-related Ullrich congenital muscular dystrophyLOFAR

This gene — mechanism propensity

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.7326th %ile
GOF
0.74top 25%
LOF
0.3066th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Literature Evidence

DNBiosynthetic studies of mutant fibroblasts indicated that the mutant ?3(VI) collagen protein was produced and exerted a dominant-negative effect on collagen VI microfibrillar assembly.1

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

References

  1. 1.PMID 21943391

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

COL6A3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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