COL4A2

Chr 13ADAR

collagen type IV alpha 2 chain

Also known as: BSVD2, BSVD2A, BSVD2B, ICH, POREN2

This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. The C-terminal portion of the protein, known as canstatin, is an inhibitor of angiogenesis and tumor growth. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene so that each gene pair shares a common promoter. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

{Hemorrhage, intracerebral, susceptibility to}MIM #614519
Brain small vessel disease 2A, autosomal dominantMIM #614483
AD
Brain small vessel disease 2B, autosomal recessiveMIM #621414
AR
UniProtIntracerebral hemorrhage

Clinical highlights

Interpreting a novel variant
A dominant-negative effect is the curated mechanism (Gene2Phenotype), so a variant that simply removes the protein may not be the pathogenic class here — missense variants in functional domains often carry more weight.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
112
Pubs (1 yr)
P/LP submissions
P/LP missense
0.58
LOEUF
DN
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.58LOEUF
pLI 0.000
Z-score 4.81
OE 0.45 (0.350.58)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.19Z-score
OE missense 0.81 (0.760.86)
842 obs / 1040.4 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.45 (0.350.58)
00.351.4
Missense OE?0.81 (0.760.86)
00.61.4
Synonymous OE?0.95
01.21.6
LoF obs/exp: 40 / 89.0Missense obs/exp: 842 / 1040.4Syn Z: 0.83

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

COL4A2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.