COL4A1
Chr 13ADcollagen type IV alpha 1 chain
Also known as: BSVD, BSVD1, COL4A1s, PADMAL, RATOR
The encoded type IV collagen alpha protein functions as part of a heterotrimer that forms integral components of basement membranes and interacts with other extracellular matrix components including perlecans, proteoglycans, and laminins. Mutations cause autosomal dominant conditions including hereditary angiopathy with nephropathy, aneurysms and muscle cramps, brain small vessel disease with or without ocular anomalies, and pontine microangiopathy with leukoencephalopathy. The pathogenic mechanism involves loss of function, leading to compromised basement membrane integrity in cerebrovascular and other tissues.
Definitive — sufficient evidence for diagnostic panels
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Among the most LoF-intolerant genes (~top 3%)
Moderately missense-constrained (top ~2.5%)
The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).
Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.
Literature Evidence
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
COL4A1 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
COL4A1COL4A2: Study of Pathological Conditions Involving Multiple Organs Caused by Mutations in the COL4A1 and COL4A2 Genes
RECRUITINGTaiwan Associated Genetic and Nongenetic Small Vessel Disease
RECRUITINGExternal Resources
Links to major genomics databases and tools