COL24A1

Chr 1

collagen type XXIV alpha 1 chain

This gene encodes a collagen family member that regulates type I collagen fibrillogenesis during fetal development. Mutations cause craniosynostosis, midfacial hypoplasia, foot abnormalities, and intellectual disability syndrome, which follows an autosomal dominant inheritance pattern. The gene is not highly constrained against loss-of-function variants, and the associated disorder primarily affects craniofacial development and cognitive function.

Summary from RefSeq, UniProt
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0
Active trials
6
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.91
LOEUF
DN
Mechanism· predicted
Clinical SummaryCOL24A1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.91LOEUF
pLI 0.000
Z-score 2.32
OE 0.76 (0.630.91)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.21Z-score
OE missense 1.02 (0.961.08)
908 obs / 890.3 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.76 (0.630.91)
00.351.4
Missense OE1.02 (0.961.08)
00.61.4
Synonymous OE0.99
01.21.6
LoF obs/exp: 82 / 108.0Missense obs/exp: 908 / 890.3Syn Z: 0.17
DN
0.6647th %ile
GOF
0.5268th %ile
LOF
0.4825th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

COL24A1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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