CLDN9

Chr 16AR

claudin 9

Also known as: DFNB116

This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining cell polarity and signal transductions. This protein is one of the entry cofactors for hepatitis C virus. Mouse studies revealed that this gene is required for the preservation of sensory cells in the hearing organ and the gene deficiency is associated with deafness. [provided by RefSeq, Jun 2010]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Deafness, autosomal recessive 116MIM #619093
AR

Clinical highlights

Gene-disease validity (ClinGen)
hearing loss, autosomal recessive 116 · ARModerateconsider for supplementary testing
0
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
1.90
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.90LOEUF
pLI 0.000
Z-score -0.65
OE 1.30 (0.711.90)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-1.08Z-score
OE missense 1.26 (1.111.42)
179 obs / 142.6 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.30 (0.711.90)
00.351.4
Missense OE?1.26 (1.111.42)
00.61.4
Synonymous OE?1.36
01.21.6
LoF obs/exp: 7 / 5.4Missense obs/exp: 179 / 142.6Syn Z: -2.42

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

CLDN9 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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